PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4438_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 400aa    MW: 45070.3 Da    PI: 4.8537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4438_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12193244155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  RrC4438_p3 193 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 244
                 79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13191247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-12191248No hitNo description
SuperFamilySSF474592.49E-16192257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428192243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9193244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9198249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0012326390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAMDKEYSAP NFLGESSGGK DDTSDGMIDY MFNRNLQQEK QSMPQQHQLS PSGFGATPTF  60
DKMSFADVMQ FADFGPKLAL NQTRNQDDQE TGQGMDPVYF LKFPVLNDKI EDRNQTHHLM  120
PQEGGECEGN IGNVFLEEKE NQEDENDNNS VQLRYIGGEE EDDRENKNVT TKEVKSKRKR  180
ARTSKTSEEV ESQRMTHIAV ERNRRKQMNE HLRVLRSLMP GSYVQRGDQA SIIGGAIEFV  240
RELEQLLQCL ESQKRRRILG ETGNRHLGDM TTTTTTSSPI TSVNNPLIIT GNVTESEGGG  300
GLQEETAENK SCLADVEVKL LGFDAMIKIL SRRRPGQLIK TIAALEDLHL SILHTNITTM  360
EQTVLYSFNV KITSETRFTA EDIASSIQEI FTFIHANTTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193204RMTHIAVERNRR
2253257KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936311e-120AB493631.1 Arabidopsis thaliana At3g24140 mRNA for hypothetical protein, partial cds, clone: RAAt3g24140.
GenBankAF4886241e-120AF488624.1 Arabidopsis thaliana clone bHLH097 putative bHLH transcription factor mRNA, partial sequence.
GenBankAK2213241e-120AK221324.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL25-14-O10.
GenBankBT0289611e-120BT028961.1 Arabidopsis thaliana At3g24140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106193.10.0PREDICTED: transcription factor FAMA-like
RefseqXP_009106201.10.0PREDICTED: transcription factor FAMA-like
SwissprotQ56YJ80.0FAMA_ARATH; Transcription factor FAMA
TrEMBLM4EHU20.0M4EHU2_BRARP; Uncharacterized protein
STRINGBra028357.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55482649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.10.0bHLH family protein